Ukraine¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 09:39:36 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview("Ukraine", weeks=5);
2023-03-07T09:39:40.755274 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 0 5 5 10 10 15 15 20 20 7-day incidence rate (per 100K people) 18.5 Ukraine, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 5 10 15 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.00 0.05 0.10 0.15 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 2 2 4 4 6 6 8 8 10 10 R & growth factor (based on cases) Ukraine cases daily growth factor Ukraine cases daily growth factor (rolling mean) Ukraine estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 2 2 4 4 6 6 8 8 10 10 R & growth factor (based on deaths) Ukraine deaths daily growth factor Ukraine deaths daily growth factor (rolling mean) Ukraine estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 20000 40000 60000 cases doubling time [days] Ukraine doubling time cases (rolling mean) Ukraine doubling time deaths (rolling mean) 0 2187 4373 6560 daily change Ukraine new cases (rolling 7d mean) Ukraine new cases 0.00 21.87 43.73 65.60 daily change Ukraine new deaths (rolling 7d mean) Ukraine new deaths 0 40152 80304 120456 deaths doubling time [days]
In [4]:
overview("Ukraine");
2023-03-07T09:39:50.008380 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 0 200 200 400 400 600 600 7-day incidence rate (per 100K people) 18.5 Ukraine, last data point from 2023-03-06 Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 50 100 150 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.0 0.5 1.0 1.5 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 2 2 4 4 6 6 8 8 10 10 R & growth factor (based on cases) Ukraine cases daily growth factor Ukraine cases daily growth factor (rolling mean) Ukraine estimated R (using cases) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 2 2 4 4 6 6 8 8 10 10 R & growth factor (based on deaths) Ukraine deaths daily growth factor Ukraine deaths daily growth factor (rolling mean) Ukraine estimated R (using deaths) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 50000 100000 150000 cases doubling time [days] Ukraine doubling time cases (rolling mean) Ukraine doubling time deaths (rolling mean) 0 21867 43734 65601 daily change Ukraine new cases (rolling 7d mean) Ukraine new cases 0.0 218.7 437.3 656.0 daily change Ukraine new deaths (rolling 7d mean) Ukraine new deaths 0 41958 83916 125874 deaths doubling time [days]
In [5]:
compare_plot("Ukraine", normalise=True);
2023-03-07T09:39:54.198554 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.001 0.001 0.1 0.1 10 10 1000 1000 daily new cases per 100K people (rolling 7-day mean) Daily cases (top) and deaths (below) for Ukraine Ukraine Germany Australia Poland Korea, South Belarus Switzerland US 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.0001 0.0001 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths per 100K people (rolling 7-day mean) Ukraine Germany Australia Poland Korea, South Belarus Switzerland US
In [6]:
# load the data
cases, deaths = get_country_data("Ukraine")

# get population of the region for future normalisation:
inhabitants = population("Ukraine")
print(f'Population of "Ukraine": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of "Ukraine": 43733759 people
Out[6]:
total cases daily new cases total deaths daily new deaths
2023-03-06 5701855 112 119216 3
2023-03-05 5701743 141 119213 1
2023-03-04 5701602 128 119212 1
2023-03-03 5701474 141 119211 1
2023-03-02 5701333 84 119210 1
... ... ... ... ...
2020-01-27 0 0 0 0
2020-01-26 0 0 0 0
2020-01-25 0 0 0 0
2020-01-24 0 0 0 0
2020-01-23 0 0 0 0

1139 rows × 4 columns

Explore the data in your web browser¶

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Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:00:17.692508