United States: Oregon¶

  • Homepage of project: https://oscovida.github.io
  • Plots are explained at http://oscovida.github.io/plots.html
  • Execute this Jupyter Notebook using myBinder
In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")

Notebook executed on: 26/01/2023 16:45:18 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="US", region="Oregon", weeks=5);

/tank/oscovida/work/oscovida.github.io/oscovida.github.io/.venv/lib/python3.9/site-packages/oscovida/oscovida.py:211: FutureWarning: The default value of numeric_only in DataFrameGroupBy.sum is deprecated. In a future version, numeric_only will default to False. Either specify numeric_only or select only columns which should be valid for the function.
  tmpd = deaths.groupby('Province_State').sum()
/tank/oscovida/work/oscovida.github.io/oscovida.github.io/.venv/lib/python3.9/site-packages/oscovida/oscovida.py:213: FutureWarning: The default value of numeric_only in DataFrameGroupBy.sum is deprecated. In a future version, numeric_only will default to False. Either specify numeric_only or select only columns which should be valid for the function.
  tmpc = cases.groupby('Province_State').sum()
2023-01-26T16:45:22.435896 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/ 26 Dec 02 Jan 09 Jan 16 Jan 23 Jan 50 50 60 60 70 70 80 80 7-day incidence rate (per 100K people) 51.5 Oregon, US, last 5 weeks, last data point from 2023-01-25 26 Dec 02 Jan 09 Jan 16 Jan 23 Jan 0 20 40 60 daily change normalised per 100K 26 Dec 02 Jan 09 Jan 16 Jan 23 Jan 0.0 0.5 1.0 daily change normalised per 100K 26 Dec 02 Jan 09 Jan 16 Jan 23 Jan 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) United States: Oregon cases daily growth factor United States: Oregon cases daily growth factor (rolling mean) United States: Oregon estimated R (using cases) 26 Dec 02 Jan 09 Jan 16 Jan 23 Jan 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) United States: Oregon deaths daily growth factor United States: Oregon deaths daily growth factor (rolling mean) United States: Oregon estimated R (using deaths) 26 Dec 02 Jan 09 Jan 16 Jan 23 Jan 0 1000 2000 3000 cases doubling time [days] United States: Oregon doubling time cases (rolling mean) United States: Oregon doubling time deaths (rolling mean) 0 844 1687 2531 daily change United States: Oregon new cases (rolling 7d mean) United States: Oregon new cases 0.00 21.09 42.18 daily change United States: Oregon new deaths (rolling 7d mean) United States: Oregon new deaths 0 1153 2305 3458 deaths doubling time [days]
In [4]:
overview(country="US", region="Oregon");

/tank/oscovida/work/oscovida.github.io/oscovida.github.io/.venv/lib/python3.9/site-packages/oscovida/oscovida.py:211: FutureWarning: The default value of numeric_only in DataFrameGroupBy.sum is deprecated. In a future version, numeric_only will default to False. Either specify numeric_only or select only columns which should be valid for the function.
  tmpd = deaths.groupby('Province_State').sum()
/tank/oscovida/work/oscovida.github.io/oscovida.github.io/.venv/lib/python3.9/site-packages/oscovida/oscovida.py:213: FutureWarning: The default value of numeric_only in DataFrameGroupBy.sum is deprecated. In a future version, numeric_only will default to False. Either specify numeric_only or select only columns which should be valid for the function.
  tmpc = cases.groupby('Province_State').sum()
2023-01-26T16:45:30.535055 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/ Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 500 500 1000 1000 1500 1500 7-day incidence rate (per 100K people) 51.5 Oregon, US, last data point from 2023-01-25 Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 200 400 600 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.0 0.5 1.0 1.5 2.0 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) United States: Oregon cases daily growth factor United States: Oregon cases daily growth factor (rolling mean) United States: Oregon estimated R (using cases)