Sweden¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 09:38:57 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview("Sweden", weeks=5);
2023-03-07T09:39:00.718716 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 10 10 20 20 30 30 7-day incidence rate (per 100K people) 7.0 Sweden, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 5 10 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.5 1.0 1.5 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Sweden cases daily growth factor Sweden cases daily growth factor (rolling mean) Sweden estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.5 0.5 1.0 1.0 1.5 1.5 2.0 2.0 2.5 2.5 R & growth factor (based on deaths) Sweden deaths daily growth factor Sweden deaths daily growth factor (rolling mean) Sweden estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 10000 20000 cases doubling time [days] Sweden doubling time cases (rolling mean) Sweden doubling time deaths (rolling mean) 0 505 1010 daily change Sweden new cases (rolling 7d mean) Sweden new cases 0.0 50.5 101.0 151.5 daily change Sweden new deaths (rolling 7d mean) Sweden new deaths 0 1808 3615 deaths doubling time [days]
In [4]:
overview("Sweden");
2023-03-07T09:39:09.983599 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 0 1000 1000 2000 2000 7-day incidence rate (per 100K people) 7.0 Sweden, last data point from 2023-03-06 Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 500 1000 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 1 2 3 4 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Sweden cases daily growth factor Sweden cases daily growth factor (rolling mean) Sweden estimated R (using cases) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.5 0.5 1.0 1.0 1.5 1.5 2.0 2.0 2.5 2.5 R & growth factor (based on deaths) Sweden deaths daily growth factor Sweden deaths daily growth factor (rolling mean) Sweden estimated R (using deaths) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 10000 20000 cases doubling time [days] Sweden doubling time cases (rolling mean) Sweden doubling time deaths (rolling mean) 0 50496 100993 daily change Sweden new cases (rolling 7d mean) Sweden new cases 0 101 202 303 404 daily change Sweden new deaths (rolling 7d mean) Sweden new deaths 0 7858 15716 deaths doubling time [days]
In [5]:
compare_plot("Sweden", normalise=True);
2023-03-07T09:39:14.391617 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.001 0.001 0.1 0.1 10 10 1000 1000 daily new cases per 100K people (rolling 7-day mean) Daily cases (top) and deaths (below) for Sweden Sweden Germany Australia Poland Korea, South Belarus Switzerland US 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.0001 0.0001 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths per 100K people (rolling 7-day mean) Sweden Germany Australia Poland Korea, South Belarus Switzerland US
In [6]:
# load the data
cases, deaths = get_country_data("Sweden")

# get population of the region for future normalisation:
inhabitants = population("Sweden")
print(f'Population of "Sweden": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of "Sweden": 10099270 people
Out[6]:
total cases daily new cases total deaths daily new deaths
2023-03-06 2698535 0 23731 0
2023-03-05 2698535 0 23731 0
2023-03-04 2698535 0 23731 0
2023-03-03 2698535 0 23731 0
2023-03-02 2698535 708 23731 69
... ... ... ... ...
2020-01-27 0 0 0 0
2020-01-26 0 0 0 0
2020-01-25 0 0 0 0
2020-01-24 0 0 0 0
2020-01-23 0 0 0 0

1139 rows × 4 columns

Explore the data in your web browser¶

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Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:00:17.755645