Saudi Arabia¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 09:38:11 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview("Saudi Arabia", weeks=5);
2023-03-07T09:38:15.190436 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 1.4 1.4 7-day incidence rate (per 100K people) Saudi Arabia, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.1 0.2 0.3 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.000 0.002 0.004 0.006 0.008 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Saudi Arabia cases daily growth factor Saudi Arabia cases daily growth factor (rolling mean) Saudi Arabia estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.4 0.4 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on deaths) Saudi Arabia deaths daily growth factor Saudi Arabia deaths daily growth factor (rolling mean) Saudi Arabia estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 5000 10000 15000 cases doubling time [days] Saudi Arabia doubling time cases (rolling mean) Saudi Arabia doubling time deaths (rolling mean) 0.0 34.8 69.6 104.4 daily change Saudi Arabia new cases (rolling 7d mean) Saudi Arabia new cases 0.000 0.696 1.393 2.089 2.785 daily change Saudi Arabia new deaths (rolling 7d mean) Saudi Arabia new deaths 0 3261 6522 9783 deaths doubling time [days]
In [4]:
overview("Saudi Arabia");
2023-03-07T09:38:24.578474 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 0 25 25 50 50 75 75 100 100 7-day incidence rate (per 100K people) 1.4 Saudi Arabia, last data point from 2023-03-06 Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 5 10 15 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.00 0.05 0.10 0.15 0.20 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Saudi Arabia cases daily growth factor Saudi Arabia cases daily growth factor (rolling mean) Saudi Arabia estimated R (using cases) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.4 0.4 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on deaths) Saudi Arabia deaths daily growth factor Saudi Arabia deaths daily growth factor (rolling mean) Saudi Arabia estimated R (using deaths) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 10000 20000 30000 cases doubling time [days] Saudi Arabia doubling time cases (rolling mean) Saudi Arabia doubling time deaths (rolling mean) 0 1741 3481 5222 daily change Saudi Arabia new cases (rolling 7d mean) Saudi Arabia new cases 0.00 17.41 34.81 52.22 69.63 daily change Saudi Arabia new deaths (rolling 7d mean) Saudi Arabia new deaths 0 3489 6977 10466 deaths doubling time [days]
In [5]:
compare_plot("Saudi Arabia", normalise=True);
2023-03-07T09:38:28.457909 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.001 0.001 0.1 0.1 10 10 1000 1000 daily new cases per 100K people (rolling 7-day mean) Daily cases (top) and deaths (below) for Saudi Arabia Saudi Arabia Germany Australia Poland Korea, South Belarus Switzerland US 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.0001 0.0001 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths per 100K people (rolling 7-day mean) Saudi Arabia Germany Australia Poland Korea, South Belarus Switzerland US
In [6]:
# load the data
cases, deaths = get_country_data("Saudi Arabia")

# get population of the region for future normalisation:
inhabitants = population("Saudi Arabia")
print(f'Population of "Saudi Arabia": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of "Saudi Arabia": 34813867 people
Out[6]:
total cases daily new cases total deaths daily new deaths
2023-03-06 829882 98 9617 0
2023-03-05 829784 54 9617 0
2023-03-04 829730 106 9617 0
2023-03-03 829624 0 9617 0
2023-03-02 829624 70 9617 2
... ... ... ... ...
2020-01-27 0 0 0 0
2020-01-26 0 0 0 0
2020-01-25 0 0 0 0
2020-01-24 0 0 0 0
2020-01-23 0 0 0 0

1139 rows × 4 columns

Explore the data in your web browser¶

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Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:00:17.834241