Saint Vincent and the Grenadines¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")

Notebook executed on: 07/03/2023 09:37:57 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview("Saint Vincent and the Grenadines", weeks=5);
2023-03-07T09:38:01.324677 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 0 1 1 2 2 3 3 7-day incidence rate (per 100K people) 0.0 Saint Vincent and the Grenadines, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 1 2 3 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar −0.050 −0.050 −0.025 −0.025 0.000 0.000 0.025 0.025 0.050 0.050 daily change Saint Vincent and the Grenadines new deaths (rolling 7d mean) Saint Vincent and the Grenadines new deaths 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.0 0.5 0.5 1.0 1.0 R & growth factor (based on cases) Saint Vincent and the Grenadines cases daily growth factor Saint Vincent and the Grenadines cases daily growth factor (rolling mean) Saint Vincent and the Grenadines estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 0.9 0.9 1.0 1.0 1.1 1.1 1.2 1.2 R & growth factor (based on deaths) Saint Vincent and the Grenadines deaths daily growth factor Saint Vincent and the Grenadines deaths daily growth factor (rolling mean) Saint Vincent and the Grenadines estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.2 0.4 0.6 0.8 1.0 0.000 1.109 2.219 3.328 daily change Saint Vincent and the Grenadines new cases (rolling 7d mean) Saint Vincent and the Grenadines new cases 0.0 0.2 0.4 0.6 0.8 1.0
In [4]:
overview("Saint Vincent and the Grenadines");
2023-03-07T09:38:10.432719 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 −1000 −1000 0 0 1000 1000 2000 2000 7-day incidence rate (per 100K people) 0.0 Saint Vincent and the Grenadines, last data point from 2023-03-06 Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 500 1000 1500 2000 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 2 4 6 8 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.0 0.0 0.5 0.5 1.0 1.0 R & growth factor (based on cases) Saint Vincent and the Grenadines cases daily growth factor Saint Vincent and the Grenadines cases daily growth factor (rolling mean) Saint Vincent and the Grenadines estimated R (using cases) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.8 0.8 0.9 0.9 1.0 1.0 1.1 1.1 1.2 1.2 R & growth factor (based on deaths) Saint Vincent and the Grenadines deaths daily growth factor Saint Vincent and the Grenadines deaths daily growth factor (rolling mean) Saint Vincent and the Grenadines estimated R (using deaths) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 5000 10000 cases doubling time [days] Saint Vincent and the Grenadines doubling time cases (rolling mean) Saint Vincent and the Grenadines doubling time deaths (rolling mean) 0 555 1109 1664 2219 daily change Saint Vincent and the Grenadines new cases (rolling 7d mean) Saint Vincent and the Grenadines new cases 0.00 2.22 4.44 6.66 8.88 daily change Saint Vincent and the Grenadines new deaths (rolling 7d mean) Saint Vincent and the Grenadines new deaths 0.00 28.42 56.83 deaths doubling time [days]
In [5]:
compare_plot("Saint Vincent and the Grenadines", normalise=True);
2023-03-07T09:38:14.795249 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.001 0.001 0.1 0.1 10 10 1000 1000 daily new cases per 100K people (rolling 7-day mean) Daily cases (top) and deaths (below) for Saint Vincent and the Grenadines Saint Vincent and the Grenadines Germany Australia Poland Korea, South Belarus Switzerland US 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.0001 0.0001 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths per 100K people (rolling 7-day mean) Saint Vincent and the Grenadines Germany Australia Poland Korea, South Belarus Switzerland US
In [6]:
# load the data
cases, deaths = get_country_data("Saint Vincent and the Grenadines")

# get population of the region for future normalisation:
inhabitants = population("Saint Vincent and the Grenadines")
print(f'Population of "Saint Vincent and the Grenadines": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table

Population of "Saint Vincent and the Grenadines": 110947 people
Out[6]:
total cases daily new cases total deaths daily new deaths
2023-03-06 9589 0 123 0
2023-03-05 9589 0 123 0
2023-03-04 9589 0 123 0
2023-03-03 9589 0 123 0
2023-03-02 9589 0 123 0
... ... ... ... ...
2020-01-27 0 0 0 0
2020-01-26 0 0 0 0
2020-01-25 0 0 0 0
2020-01-24 0 0 0 0
2020-01-23 0 0 0 0

1139 rows × 4 columns

Explore the data in your web browser¶

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Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)
In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")

Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")

Notebook execution took: 0:00:18.124689