Lebanon¶

  • Homepage of project: https://oscovida.github.io
  • Plots are explained at http://oscovida.github.io/plots.html
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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 09:35:52 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview("Lebanon", weeks=5);
2023-03-07T09:35:55.966133 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 10 10 15 15 20 20 7-day incidence rate (per 100K people) 9.9 Lebanon, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 2 4 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.00 0.02 0.04 0.06 0.08 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Lebanon cases daily growth factor Lebanon cases daily growth factor (rolling mean) Lebanon estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 1.4 1.4 R & growth factor (based on deaths) Lebanon deaths daily growth factor Lebanon deaths daily growth factor (rolling mean) Lebanon estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 2000 4000 6000 8000 cases doubling time [days] Lebanon doubling time cases (rolling mean) Lebanon doubling time deaths (rolling mean) 0.0 136.5 273.0 daily change Lebanon new cases (rolling 7d mean) Lebanon new cases 0.000 1.365 2.730 4.095 5.460 daily change Lebanon new deaths (rolling 7d mean) Lebanon new deaths 0 1678 3355 5033 6711 deaths doubling time [days]
In [4]:
overview("Lebanon");
2023-03-07T09:36:05.407775 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 0 200 200 400 400 600 600 800 800 7-day incidence rate (per 100K people) 9.9 Lebanon, last data point from 2023-03-06 Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 50 100 150 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 2 4 daily change normalised per 100K Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Lebanon cases daily growth factor Lebanon cases daily growth factor (rolling mean) Lebanon estimated R (using cases) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0.8 0.8 1.0 1.0 1.2 1.2 1.4 1.4 R & growth factor (based on deaths) Lebanon deaths daily growth factor Lebanon deaths daily growth factor (rolling mean) Lebanon estimated R (using deaths) Jan 20 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 May 23 0 20000 40000 cases doubling time [days] Lebanon doubling time cases (rolling mean) Lebanon doubling time deaths (rolling mean) 0 3413 6825 10238 daily change Lebanon new cases (rolling 7d mean) Lebanon new cases 0.0 136.5 273.0 daily change Lebanon new deaths (rolling 7d mean) Lebanon new deaths 0 4954 9908 deaths doubling time [days]
In [5]:
compare_plot("Lebanon", normalise=True);
2023-03-07T09:36:09.695225 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.001 0.001 0.1 0.1 10 10 1000 1000 daily new cases per 100K people (rolling 7-day mean) Daily cases (top) and deaths (below) for Lebanon Lebanon Germany Australia Poland Korea, South Belarus Switzerland US 2020-01 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 2023-05 0.0001 0.0001 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths per 100K people (rolling 7-day mean) Lebanon Germany Australia Poland Korea, South Belarus Switzerland US
In [6]:
# load the data
cases, deaths = get_country_data("Lebanon")

# get population of the region for future normalisation:
inhabitants = population("Lebanon")
print(f'Population of "Lebanon": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of "Lebanon": 6825442 people
Out[6]:
total cases daily new cases total deaths daily new deaths
2023-03-06 1232517 0 10840 0
2023-03-05 1232517 216 10840 5
2023-03-04 1232301 0 10835 0
2023-03-03 1232301 238 10835 3
2023-03-02 1232063 0 10832 0
... ... ... ... ...
2020-01-27 0 0 0 0
2020-01-26 0 0 0 0
2020-01-25 0 0 0 0
2020-01-24 0 0 0 0
2020-01-23 0 0 0 0

1139 rows × 4 columns

Explore the data in your web browser¶

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Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:00:18.148653