Germany: SK Hagen (Nordrhein-Westfalen)¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 14:25:53 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="SK Hagen", weeks=5);
2023-03-07T14:26:09.981397 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 75 75 100 100 125 125 150 150 7-day incidence rate (per 100K people) 66.2 SK Hagen, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 10 20 30 40 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.5 1.0 1.5 2.0 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 1.4 1.4 R & growth factor (based on cases) Germany-SK Hagen cases daily growth factor Germany-SK Hagen cases daily growth factor (rolling mean) Germany-SK Hagen estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 0 2 2 4 4 6 6 R & growth factor (based on deaths) Germany-SK Hagen deaths daily growth factor Germany-SK Hagen deaths daily growth factor (rolling mean) Germany-SK Hagen estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 2000 4000 cases doubling time [days] Germany-SK Hagen doubling time cases (rolling mean) Germany-SK Hagen doubling time deaths (rolling mean) 0.00 18.87 37.74 56.61 75.49 daily change Germany-SK Hagen new cases (rolling 7d mean) Germany-SK Hagen new cases 0.000 0.944 1.887 2.831 3.774 daily change Germany-SK Hagen new deaths (rolling 7d mean) Germany-SK Hagen new deaths 0.0 281.6 563.1 deaths doubling time [days]
In [4]:
overview(country="Germany", subregion="SK Hagen");
2023-03-07T14:26:27.960636 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 500 500 1000 1000 1500 1500 2000 2000 7-day incidence rate (per 100K people) 66.2 SK Hagen, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 100 200 300 400 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 1 2 3 4 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.8 0.8 1.0 1.0 1.2 1.2 1.4 1.4 R & growth factor (based on cases) Germany-SK Hagen cases daily growth factor Germany-SK Hagen cases daily growth factor (rolling mean) Germany-SK Hagen estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 2 2 4 4 6 6 R & growth factor (based on deaths) Germany-SK Hagen deaths daily growth factor Germany-SK Hagen deaths daily growth factor (rolling mean) Germany-SK Hagen estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2500 5000 7500 10000 cases doubling time [days] Germany-SK Hagen doubling time cases (rolling mean) Germany-SK Hagen doubling time deaths (rolling mean) 0.0 188.7 377.4 566.1 754.9 daily change Germany-SK Hagen new cases (rolling 7d mean) Germany-SK Hagen new cases 0.000 1.887 3.774 5.661 7.549 daily change Germany-SK Hagen new deaths (rolling 7d mean) Germany-SK Hagen new deaths 0.0 174.2 348.4 522.7 696.9 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="SK Hagen", dates="2020-03-15:");
2023-03-07T14:28:11.931244 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: SK Hagen SK Hagen Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people SK Hagen Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="SK Hagen")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="SK Hagen")
print(f'Population of country="Germany", subregion="SK Hagen": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="SK Hagen": 188713 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 84992 16 646 0
2023-03-03 84976 10 646 0
2023-03-02 84966 18 646 0
2023-03-01 84948 34 646 0
2023-02-28 84914 47 646 0
2023-02-27 84867 60 646 0
2023-02-24 84807 27 646 0
2023-02-23 84780 36 646 0
2023-02-22 84744 27 646 0
2023-02-21 84717 91 646 1
2023-02-20 84626 75 645 1
2023-02-17 84551 45 644 0
2023-02-16 84506 44 644 0
2023-02-15 84462 49 644 0
2023-02-14 84413 73 644 2
2023-02-13 84340 74 642 4
2023-02-10 84266 31 638 0
2023-02-09 84235 39 638 0
2023-02-08 84196 41 638 1
2023-02-07 84155 39 637 0
2023-02-06 84116 46 637 0
2023-02-03 84070 26 637 0
2023-02-02 84044 30 637 0
2023-02-01 84014 50 637 0
2023-01-31 83964 61 637 0
2023-01-30 83903 70 637 1
2023-01-27 83833 31 636 0
2023-01-26 83802 33 636 1
2023-01-25 83769 49 635 0
2023-01-24 83720 35 635 1
2023-01-23 83685 65 634 0
2023-01-20 83620 20 634 1
2023-01-19 83600 38 633 0
2023-01-18 83562 32 633 0
2023-01-17 83530 45 633 1
2023-01-16 83485 73 632 0
2023-01-13 83412 34 632 1
2023-01-12 83378 48 631 0
2023-01-11 83330 46 631 0
2023-01-10 83284 50 631 2
2023-01-09 83234 125 629 2
2023-01-06 83109 47 627 1
2023-01-05 83062 80 626 0
2023-01-04 82982 84 626 1
2023-01-03 82898 95 625 1
2023-01-02 82803 136 624 5
2022-12-30 82667 63 619 2
2022-12-29 82604 131 617 1
2022-12-28 82473 162 616 2
2022-12-27 82311 216 614 1
2022-12-26 82095 6 613 0
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2022-12-21 81802 178 613 3
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2022-12-12 80630 187 604 2
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2022-12-08 80343 102 600 1
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2022-12-04 79849 5 597 0
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Explore the data in your web browser¶

  • If you want to execute this notebook, click here to use myBinder
  • and wait (~1 to 2 minutes)
  • Then press SHIFT+RETURN to advance code cell to code cell
  • See http://jupyter.org for more details on how to use Jupyter Notebook

Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:02:29.828574