Germany: SK Bonn (Nordrhein-Westfalen)¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 14:32:25 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="SK Bonn", weeks=5);
2023-03-07T14:32:48.049320 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 100 100 150 150 200 200 7-day incidence rate (per 100K people) 82.6 SK Bonn, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 20 40 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.1 0.2 0.3 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.50 0.50 0.75 0.75 1.00 1.00 1.25 1.25 1.50 1.50 R & growth factor (based on cases) Germany-SK Bonn cases daily growth factor Germany-SK Bonn cases daily growth factor (rolling mean) Germany-SK Bonn estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-SK Bonn deaths daily growth factor Germany-SK Bonn deaths daily growth factor (rolling mean) Germany-SK Bonn estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 1000 2000 3000 4000 cases doubling time [days] Germany-SK Bonn doubling time cases (rolling mean) 0.0 66.4 132.8 daily change Germany-SK Bonn new cases (rolling 7d mean) Germany-SK Bonn new cases 0.000 0.332 0.664 0.996 daily change Germany-SK Bonn new deaths (rolling 7d mean) Germany-SK Bonn new deaths 0.000 0.241 0.481 0.722 0.963
In [4]:
overview(country="Germany", subregion="SK Bonn");
2023-03-07T14:33:07.669457 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 500 500 1000 1000 1500 1500 7-day incidence rate (per 100K people) 82.6 SK Bonn, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 100 200 300 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 1 2 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.50 0.50 0.75 0.75 1.00 1.00 1.25 1.25 1.50 1.50 R & growth factor (based on cases) Germany-SK Bonn cases daily growth factor Germany-SK Bonn cases daily growth factor (rolling mean) Germany-SK Bonn estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-SK Bonn deaths daily growth factor Germany-SK Bonn deaths daily growth factor (rolling mean) Germany-SK Bonn estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2000 4000 6000 cases doubling time [days] Germany-SK Bonn doubling time cases (rolling mean) Germany-SK Bonn doubling time deaths (rolling mean) 0 332 664 996 daily change Germany-SK Bonn new cases (rolling 7d mean) Germany-SK Bonn new cases 0.000 3.319 6.638 daily change Germany-SK Bonn new deaths (rolling 7d mean) Germany-SK Bonn new deaths 0.0 172.9 345.9 518.8 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="SK Bonn", dates="2020-03-15:");
2023-03-07T14:35:08.476887 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: SK Bonn SK Bonn Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people SK Bonn Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="SK Bonn")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="SK Bonn")
print(f'Population of country="Germany", subregion="SK Bonn": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="SK Bonn": 331885 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-03 140550 13 536 0
2023-03-02 140537 32 536 0
2023-03-01 140505 95 536 0
2023-02-28 140410 134 536 0
2023-02-27 140276 77 536 0
... ... ... ... ...
2020-03-11 17 5 0 0
2020-03-10 12 6 0 0
2020-03-09 6 2 0 0
2020-03-07 4 2 0 0
2020-03-06 2 1 0 0

1045 rows × 4 columns

Explore the data in your web browser¶

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Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:02:56.538977