Germany: SK Bochum (Nordrhein-Westfalen)¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 14:17:42 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="SK Bochum", weeks=5);
2023-03-07T14:17:55.835738 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 100 100 150 150 200 200 7-day incidence rate (per 100K people) 99.6 SK Bochum, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 20 40 60 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.2 0.4 0.6 0.8 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-SK Bochum cases daily growth factor Germany-SK Bochum cases daily growth factor (rolling mean) Germany-SK Bochum estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-SK Bochum deaths daily growth factor Germany-SK Bochum deaths daily growth factor (rolling mean) Germany-SK Bochum estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 1000 2000 3000 cases doubling time [days] Germany-SK Bochum doubling time cases (rolling mean) Germany-SK Bochum doubling time deaths (rolling mean) 0.0 72.7 145.4 218.1 daily change Germany-SK Bochum new cases (rolling 7d mean) Germany-SK Bochum new cases 0.000 0.727 1.454 2.181 2.908 daily change Germany-SK Bochum new deaths (rolling 7d mean) Germany-SK Bochum new deaths 0.0 217.9 435.7 653.6 deaths doubling time [days]
In [4]:
overview(country="Germany", subregion="SK Bochum");
2023-03-07T14:18:13.309545 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 500 500 1000 1000 1500 1500 7-day incidence rate (per 100K people) 99.6 SK Bochum, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 100 200 300 400 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.0 0.5 1.0 1.5 2.0 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-SK Bochum cases daily growth factor Germany-SK Bochum cases daily growth factor (rolling mean) Germany-SK Bochum estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-SK Bochum deaths daily growth factor Germany-SK Bochum deaths daily growth factor (rolling mean) Germany-SK Bochum estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2500 5000 7500 10000 cases doubling time [days] Germany-SK Bochum doubling time cases (rolling mean) Germany-SK Bochum doubling time deaths (rolling mean) 0 363 727 1090 1454 daily change Germany-SK Bochum new cases (rolling 7d mean) Germany-SK Bochum new cases 0.000 1.817 3.634 5.452 7.269 daily change Germany-SK Bochum new deaths (rolling 7d mean) Germany-SK Bochum new deaths 0.0 160.6 321.2 481.7 642.3 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="SK Bochum", dates="2020-03-15:");
2023-03-07T14:20:51.973950 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: SK Bochum SK Bochum Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people SK Bochum Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="SK Bochum")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="SK Bochum")
print(f'Population of country="Germany", subregion="SK Bochum": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="SK Bochum": 363441 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 145639 59 576 0
2023-03-03 145580 36 576 0
2023-03-02 145544 42 576 1
2023-03-01 145502 122 575 0
2023-02-28 145380 103 575 0
2023-02-27 145277 185 575 3
2023-02-26 145092 5 572 0
2023-02-25 145087 24 572 0
2023-02-24 145063 123 572 0
2023-02-23 144940 132 572 0
2023-02-22 144808 137 572 0
2023-02-21 144671 231 572 0
2023-02-20 144440 98 572 0
2023-02-19 144342 1 572 0
2023-02-17 144341 116 572 0
2023-02-16 144225 100 572 0
2023-02-15 144125 229 572 0
2023-02-14 143896 155 572 0
2023-02-13 143741 165 572 0
2023-02-10 143576 109 572 0
2023-02-09 143467 83 572 0
2023-02-08 143384 114 572 0
2023-02-07 143270 151 572 1
2023-02-06 143119 134 571 1
2023-02-03 142985 90 570 2
2023-02-02 142895 96 568 0
2023-02-01 142799 130 568 1
2023-01-31 142669 163 567 1
2023-01-30 142506 131 566 3
2023-01-27 142375 67 563 0
2023-01-26 142308 90 563 1
2023-01-25 142218 102 562 0
2023-01-24 142116 98 562 0
2023-01-23 142018 152 562 2
2023-01-21 141866 1 560 0
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2023-01-19 141818 56 560 1
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2023-01-10 141325 90 555 0
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2023-01-06 141038 103 552 2
2023-01-05 140935 135 550 0
2023-01-04 140800 173 550 1
2023-01-03 140627 239 549 2
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2022-12-30 140136 191 545 2
2022-12-29 139945 144 543 0
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Explore the data in your web browser¶

  • If you want to execute this notebook, click here to use myBinder
  • and wait (~1 to 2 minutes)
  • Then press SHIFT+RETURN to advance code cell to code cell
  • See http://jupyter.org for more details on how to use Jupyter Notebook

Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:03:39.223793