Germany: LK Soest (Nordrhein-Westfalen)¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")

Notebook executed on: 07/03/2023 14:24:42 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="LK Soest", weeks=5);
2023-03-07T14:24:58.270084 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 60 60 80 80 100 100 7-day incidence rate (per 100K people) 52.9 LK Soest, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 5 10 15 20 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.2 0.4 0.6 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Soest cases daily growth factor Germany-LK Soest cases daily growth factor (rolling mean) Germany-LK Soest estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.5 0.5 1.0 1.0 1.5 1.5 R & growth factor (based on deaths) Germany-LK Soest deaths daily growth factor Germany-LK Soest deaths daily growth factor (rolling mean) Germany-LK Soest estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 2000 4000 cases doubling time [days] Germany-LK Soest doubling time cases (rolling mean) Germany-LK Soest doubling time deaths (rolling mean) 0.00 15.11 30.23 45.34 60.46 daily change Germany-LK Soest new cases (rolling 7d mean) Germany-LK Soest new cases 0.000 0.605 1.209 1.814 daily change Germany-LK Soest new deaths (rolling 7d mean) Germany-LK Soest new deaths 0.0 213.8 427.6 deaths doubling time [days]
In [4]:
overview(country="Germany", subregion="LK Soest");
2023-03-07T14:25:17.069244 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 500 500 1000 1000 1500 1500 2000 2000 7-day incidence rate (per 100K people) 52.9 LK Soest, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 100 200 300 400 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 1 2 3 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Soest cases daily growth factor Germany-LK Soest cases daily growth factor (rolling mean) Germany-LK Soest estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.5 0.5 1.0 1.0 1.5 1.5 R & growth factor (based on deaths) Germany-LK Soest deaths daily growth factor Germany-LK Soest deaths daily growth factor (rolling mean) Germany-LK Soest estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2000 4000 6000 cases doubling time [days] Germany-LK Soest doubling time cases (rolling mean) Germany-LK Soest doubling time deaths (rolling mean) 0 302 605 907 1209 daily change Germany-LK Soest new cases (rolling 7d mean) Germany-LK Soest new cases 0.00 3.02 6.05 9.07 daily change Germany-LK Soest new deaths (rolling 7d mean) Germany-LK Soest new deaths 0 164 328 492 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="LK Soest", dates="2020-03-15:");
2023-03-07T14:27:57.709122 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: LK Soest LK Soest Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people LK Soest Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="LK Soest")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="LK Soest")
print(f'Population of country="Germany", subregion="LK Soest": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table

Population of country="Germany", subregion="LK Soest": 302298 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 118664 7 527 0
2023-03-05 118657 7 527 0
2023-03-04 118650 10 527 0
2023-03-03 118640 24 527 0
2023-03-02 118616 27 527 0
... ... ... ... ...
2020-03-17 36 19 0 0
2020-03-16 17 6 0 0
2020-03-14 11 2 0 0
2020-03-13 9 6 0 0
2020-03-11 3 2 0 0

1007 rows × 4 columns

Explore the data in your web browser¶

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Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)
In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")

Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")

Notebook execution took: 0:03:33.466530