Germany: LK Lippe (Nordrhein-Westfalen)¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 13:54:01 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="LK Lippe", weeks=5);
2023-03-07T13:54:14.116403 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 60 60 80 80 100 100 120 120 7-day incidence rate (per 100K people) 61.5 LK Lippe, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 10 20 30 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.000 0.000 0.025 0.025 0.050 0.050 0.075 0.075 0.100 0.100 daily change Germany-LK Lippe new deaths (rolling 7d mean) Germany-LK Lippe new deaths 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Lippe cases daily growth factor Germany-LK Lippe cases daily growth factor (rolling mean) Germany-LK Lippe estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 0.9 0.9 1.0 1.0 1.1 1.1 1.2 1.2 R & growth factor (based on deaths) Germany-LK Lippe deaths daily growth factor Germany-LK Lippe deaths daily growth factor (rolling mean) Germany-LK Lippe estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 2000 4000 cases doubling time [days] Germany-LK Lippe doubling time cases (rolling mean) 0.0 34.6 69.2 103.8 daily change Germany-LK Lippe new cases (rolling 7d mean) Germany-LK Lippe new cases 0.000 0.373 0.745
In [4]:
overview(country="Germany", subregion="LK Lippe");
2023-03-07T13:54:30.314902 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1000 1000 2000 2000 7-day incidence rate (per 100K people) 61.5 LK Lippe, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 200 400 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 1 2 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.6 0.6 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Lippe cases daily growth factor Germany-LK Lippe cases daily growth factor (rolling mean) Germany-LK Lippe estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.8 0.8 0.9 0.9 1.0 1.0 1.1 1.1 1.2 1.2 R & growth factor (based on deaths) Germany-LK Lippe deaths daily growth factor Germany-LK Lippe deaths daily growth factor (rolling mean) Germany-LK Lippe estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2000 4000 6000 8000 cases doubling time [days] Germany-LK Lippe doubling time cases (rolling mean) Germany-LK Lippe doubling time deaths (rolling mean) 0 692 1385 daily change Germany-LK Lippe new cases (rolling 7d mean) Germany-LK Lippe new cases 0.00 3.46 6.92 daily change Germany-LK Lippe new deaths (rolling 7d mean) Germany-LK Lippe new deaths 0.0 194.5 389.0 583.5 778.0 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="LK Lippe", dates="2020-03-15:");
2023-03-07T13:56:45.381490 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: LK Lippe LK Lippe Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people LK Lippe Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="LK Lippe")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="LK Lippe")
print(f'Population of country="Germany", subregion="LK Lippe": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="LK Lippe": 346151 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 152866 7 772 0
2023-03-04 152859 10 772 0
2023-03-03 152849 46 772 0
2023-03-02 152803 25 772 0
2023-03-01 152778 50 772 0
2023-02-28 152728 75 772 0
2023-02-27 152653 22 772 0
2023-02-25 152631 35 772 0
2023-02-24 152596 79 772 0
2023-02-23 152517 68 772 0
2023-02-22 152449 71 772 0
2023-02-21 152378 109 772 0
2023-02-20 152269 51 772 0
2023-02-19 152218 2 772 0
2023-02-18 152216 16 772 0
2023-02-17 152200 65 772 0
2023-02-16 152135 70 772 0
2023-02-15 152065 78 772 0
2023-02-14 151987 93 772 0
2023-02-13 151894 67 772 0
2023-02-12 151827 1 772 0
2023-02-11 151826 20 772 0
2023-02-10 151806 49 772 0
2023-02-09 151757 66 772 0
2023-02-08 151691 60 772 0
2023-02-07 151631 66 772 0
2023-02-06 151565 33 772 0
2023-02-05 151532 2 772 0
2023-02-04 151530 18 772 0
2023-02-03 151512 80 772 0
2023-02-02 151432 33 772 0
2023-02-01 151399 61 772 0
2023-01-31 151338 81 772 0
2023-01-30 151257 35 772 0
2023-01-29 151222 3 772 0
2023-01-28 151219 24 772 0
2023-01-27 151195 76 772 2
2023-01-26 151119 60 770 0
2023-01-25 151059 54 770 0
2023-01-24 151005 87 770 1
2023-01-23 150918 24 769 0
2023-01-22 150894 14 769 0
2023-01-21 150880 15 769 0
2023-01-20 150865 56 769 1
2023-01-19 150809 26 768 0
2023-01-18 150783 58 768 0
2023-01-17 150725 57 768 0
2023-01-16 150668 31 768 1
2023-01-15 150637 1 767 0
2023-01-14 150636 28 767 0
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2023-01-06 150236 136 767 1
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2023-01-02 149711 102 764 1
2023-01-01 149609 17 763 0
2022-12-31 149592 56 763 0
2022-12-30 149536 138 763 2
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2022-11-29 144586 187 733 0
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Explore the data in your web browser¶

  • If you want to execute this notebook, click here to use myBinder
  • and wait (~1 to 2 minutes)
  • Then press SHIFT+RETURN to advance code cell to code cell
  • See http://jupyter.org for more details on how to use Jupyter Notebook

Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:03:22.499188