Germany: LK Holzminden (Niedersachsen)¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 13:22:51 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="LK Holzminden", weeks=5);
2023-03-07T13:23:05.771847 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 100 100 120 120 140 140 160 160 7-day incidence rate (per 100K people) 98.8 LK Holzminden, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 10 20 30 40 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.5 1.0 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Holzminden cases daily growth factor Germany-LK Holzminden cases daily growth factor (rolling mean) Germany-LK Holzminden estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.0 0.5 0.5 1.0 1.0 R & growth factor (based on deaths) Germany-LK Holzminden deaths daily growth factor Germany-LK Holzminden deaths daily growth factor (rolling mean) Germany-LK Holzminden estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 1000 2000 3000 cases doubling time [days] Germany-LK Holzminden doubling time cases (rolling mean) 0.00 6.99 13.97 20.96 27.94 daily change Germany-LK Holzminden new cases (rolling 7d mean) Germany-LK Holzminden new cases 0.000 0.349 0.699 daily change Germany-LK Holzminden new deaths (rolling 7d mean) Germany-LK Holzminden new deaths 0.000 0.263 0.526 0.789
In [4]:
overview(country="Germany", subregion="LK Holzminden");
2023-03-07T13:23:26.310702 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1000 1000 2000 2000 7-day incidence rate (per 100K people) 98.8 LK Holzminden, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 200 400 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 5 10 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Holzminden cases daily growth factor Germany-LK Holzminden cases daily growth factor (rolling mean) Germany-LK Holzminden estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.0 0.0 0.5 0.5 1.0 1.0 R & growth factor (based on deaths) Germany-LK Holzminden deaths daily growth factor Germany-LK Holzminden deaths daily growth factor (rolling mean) Germany-LK Holzminden estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 1000 2000 3000 4000 cases doubling time [days] Germany-LK Holzminden doubling time cases (rolling mean) Germany-LK Holzminden doubling time deaths (rolling mean) 0.0 139.7 279.4 daily change Germany-LK Holzminden new cases (rolling 7d mean) Germany-LK Holzminden new cases 0.00 3.49 6.99 daily change Germany-LK Holzminden new deaths (rolling 7d mean) Germany-LK Holzminden new deaths 0.0 46.3 92.6 139.0 185.3 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="LK Holzminden", dates="2020-03-15:");
2023-03-07T13:25:45.484820 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: LK Holzminden LK Holzminden Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people LK Holzminden Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="LK Holzminden")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="LK Holzminden")
print(f'Population of country="Germany", subregion="LK Holzminden": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="LK Holzminden": 69862 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 31646 7 201 0
2023-03-03 31639 6 201 0
2023-03-02 31633 6 201 0
2023-03-01 31627 19 201 0
2023-02-28 31608 31 201 0
2023-02-27 31577 22 201 0
2023-02-24 31555 15 201 0
2023-02-23 31540 24 201 0
2023-02-22 31516 22 201 0
2023-02-21 31494 22 201 0
2023-02-20 31472 19 201 0
2023-02-17 31453 13 201 0
2023-02-16 31440 13 201 0
2023-02-15 31427 23 201 0
2023-02-14 31404 26 201 1
2023-02-13 31378 11 200 0
2023-02-10 31367 10 200 0
2023-02-09 31357 10 200 0
2023-02-08 31347 20 200 1
2023-02-07 31327 18 199 0
2023-02-06 31309 8 199 1
2023-02-03 31301 10 198 0
2023-02-02 31291 13 198 0
2023-02-01 31278 19 198 0
2023-01-31 31259 24 198 0
2023-01-30 31235 16 198 0
2023-01-27 31219 5 198 0
2023-01-26 31214 8 198 0
2023-01-25 31206 10 198 0
2023-01-24 31196 23 198 0
2023-01-23 31173 18 198 0
2023-01-20 31155 13 198 0
2023-01-19 31142 15 198 0
2023-01-18 31127 30 198 0
2023-01-17 31097 34 198 1
2023-01-16 31063 24 197 0
2023-01-13 31039 11 197 0
2023-01-12 31028 23 197 1
2023-01-11 31005 43 196 0
2023-01-10 30962 48 196 0
2023-01-09 30914 26 196 0
2023-01-06 30888 20 196 0
2023-01-05 30868 28 196 0
2023-01-04 30840 42 196 0
2023-01-03 30798 56 196 0
2023-01-02 30742 46 196 2
2022-12-30 30696 31 194 0
2022-12-29 30665 27 194 0
2022-12-28 30638 63 194 0
2022-12-27 30575 66 194 1
2022-12-23 30509 43 193 1
2022-12-22 30466 53 192 0
2022-12-21 30413 72 192 0
2022-12-20 30341 60 192 2
2022-12-19 30281 64 190 1
2022-12-16 30217 40 189 0
2022-12-15 30177 46 189 0
2022-12-14 30131 60 189 0
2022-12-13 30071 95 189 0
2022-12-12 29976 64 189 1
2022-12-09 29912 28 188 0
2022-12-08 29884 42 188 0
2022-12-07 29842 39 188 1
2022-12-06 29803 85 187 0
2022-12-05 29718 41 187 0
2022-12-02 29677 43 187 1
2022-12-01 29634 41 186 0
2022-11-30 29593 64 186 1
2022-11-29 29529 85 185 0
2022-11-28 29444 49 185 1
2022-11-25 29395 36 184 1
2022-11-24 29359 34 183 0
2022-11-23 29325 57 183 0
2022-11-22 29268 86 183 0
2022-11-21 29182 46 183 1
2022-11-18 29136 45 182 0
2022-11-17 29091 50 182 1
2022-11-16 29041 53 181 1
2022-11-15 28988 77 180 0
2022-11-14 28911 36 180 1
2022-11-11 28875 34 179 0
2022-11-10 28841 30 179 0
2022-11-09 28811 54 179 3
2022-11-08 28757 83 176 0
2022-11-07 28674 57 176 0
2022-11-04 28617 49 176 0
2022-11-03 28568 82 176 1
2022-11-02 28486 165 175 0
2022-11-01 28321 89 175 0
2022-10-28 28232 90 175 0
2022-10-27 28142 76 175 1
2022-10-26 28066 98 174 1
2022-10-25 27968 166 173 0
2022-10-24 27802 113 173 2
2022-10-21 27689 116 171 1
2022-10-20 27573 137 170 0
2022-10-19 27436 133 170 4
2022-10-18 27303 251 166 0
2022-10-17 27052 93 166 0
2022-10-14 26959 73 166 1
2022-10-13 26886 105 165 0
2022-10-12 26781 131 165 1
2022-10-11 26650 211 164 0
2022-10-10 26439 147 164 3
2022-10-07 26292 104 161 1
2022-10-06 26188 182 160 1
2022-10-05 26006 205 159 1
2022-10-04 25801 87 158 1
2022-09-30 25714 57 157 0
2022-09-29 25657 73 157 0
2022-09-28 25584 83 157 0
2022-09-27 25501 117 157 0
2022-09-26 25384 45 157 1
2022-09-23 25339 29 156 0
2022-09-22 25310 52 156 0
2022-09-21 25258 47 156 0
2022-09-20 25211 80 156 0
2022-09-19 25131 34 156 0
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2022-09-15 25071 44 156 1
2022-09-14 25027 51 155 0
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2022-09-12 24913 57 155 0
2022-09-09 24856 27 155 0
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2022-09-07 24793 40 155 0
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2022-08-29 24487 44 155 1
2022-08-26 24443 31 154 0
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2022-08-22 24255 42 154 0
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2022-08-08 23754 51 154 3
2022-08-05 23703 34 151 0
2022-08-04 23669 29 151 0
2022-08-03 23640 59 151 1
2022-08-02 23581 88 150 0
2022-08-01 23493 55 150 2
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2022-07-25 23125 79 148 2
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2021-04-01 1224 1 60 0
2021-03-31 1223 13 60 0
2021-03-30 1210 15 60 0
2021-03-27 1195 7 60 0
2021-03-26 1188 9 60 0
2021-03-25 1179 15 60 0
2021-03-24 1164 9 60 0
2021-03-23 1155 13 60 0
2021-03-22 1142 7 60 0
2021-03-19 1135 2 60 0
2021-03-18 1133 3 60 0
2021-03-17 1130 1 60 0
2021-03-16 1129 30 60 1
2021-03-15 1099 6 59 0
2021-03-12 1093 5 59 0
2021-03-11 1088 26 59 0
2021-03-10 1062 7 59 0
2021-03-09 1055 11 59 0
2021-03-08 1044 3 59 0
2021-03-05 1041 12 59 0
2021-03-04 1029 5 59 0
2021-03-03 1024 6 59 0
2021-03-02 1018 7 59 0
2021-03-01 1011 4 59 0
2021-02-26 1007 15 59 0
2021-02-25 992 4 59 0
2021-02-24 988 10 59 1
2021-02-23 978 9 58 0
2021-02-22 969 1 58 0
2021-02-20 968 8 58 3
2021-02-19 960 8 55 0
2021-02-18 952 2 55 0
2021-02-17 950 3 55 0
2021-02-16 947 5 55 1
2021-02-15 942 4 54 0
2021-02-14 938 2 54 0
2021-02-13 936 4 54 0
2021-02-12 932 11 54 0
2021-02-11 921 14 54 2
2021-02-10 907 4 52 0
2021-02-09 903 4 52 0
2021-02-08 899 7 52 0
2021-02-05 892 3 52 0
2021-02-04 889 6 52 0
2021-02-03 883 11 52 0
2021-02-02 872 3 52 0
2021-02-01 869 11 52 0
2021-01-29 858 3 52 0
2021-01-28 855 12 52 0
2021-01-27 843 8 52 1
2021-01-26 835 11 51 0
2021-01-25 824 8 51 1
2021-01-22 816 4 50 0
2021-01-21 812 15 50 2
2021-01-20 797 21 48 1
2021-01-19 776 18 47 2
2021-01-18 758 14 45 0
2021-01-15 744 45 45 10
2021-01-14 699 15 35 0
2021-01-13 684 13 35 0
2021-01-12 671 20 35 4
2021-01-11 651 1 31 0
2021-01-09 650 10 31 1
2021-01-08 640 7 30 1
2021-01-07 633 7 29 2
2021-01-06 626 15 27 0
2021-01-05 611 13 27 0
2021-01-04 598 23 27 0
2020-12-30 575 6 27 0
2020-12-29 569 13 27 1
2020-12-28 556 7 26 1
2020-12-27 549 4 25 0
2020-12-26 545 1 25 0
2020-12-25 544 2 25 0
2020-12-24 542 4 25 0
2020-12-23 538 11 25 0
2020-12-22 527 16 25 1
2020-12-21 511 31 24 2
2020-12-17 480 11 22 0
2020-12-16 469 12 22 0
2020-12-15 457 12 22 3
2020-12-14 445 11 19 0
2020-12-13 434 3 19 1
2020-12-12 431 14 18 0
2020-12-11 417 8 18 0
2020-12-10 409 37 18 2
2020-12-09 372 6 16 0
2020-12-08 366 20 16 1
2020-12-07 346 19 15 2
2020-12-04 327 18 13 1
2020-12-03 309 2 12 0
2020-12-02 307 14 12 0
2020-12-01 293 11 12 2
2020-11-30 282 7 10 0
2020-11-27 275 3 10 0
2020-11-26 272 10 10 0
2020-11-25 262 11 10 2
2020-11-24 251 7 8 0
2020-11-23 244 1 8 0
2020-11-21 243 4 8 0
2020-11-20 239 7 8 1
2020-11-19 232 7 7 0
2020-11-18 225 11 7 0
2020-11-17 214 4 7 0
2020-11-16 210 4 7 0
2020-11-13 206 2 7 0
2020-11-12 204 4 7 0
2020-11-11 200 6 7 0
2020-11-10 194 3 7 0
2020-11-09 191 3 7 0
2020-11-06 188 3 7 0
2020-11-05 185 6 7 0
2020-11-04 179 2 7 0
2020-11-03 177 9 7 0
2020-11-02 168 2 7 0
2020-10-31 166 4 7 0
2020-10-30 162 7 7 0
2020-10-29 155 4 7 0
2020-10-28 151 4 7 0
2020-10-26 147 1 7 0
2020-10-20 146 2 7 0
2020-10-19 144 1 7 0
2020-10-16 143 1 7 0
2020-10-15 142 1 7 0
2020-10-13 141 1 7 0
2020-10-12 140 1 7 0
2020-10-09 139 1 7 0
2020-10-06 138 2 7 0
2020-10-02 136 1 7 0
2020-09-27 135 1 7 0
2020-09-24 134 1 7 0
2020-09-23 133 1 7 0
2020-09-19 132 1 7 0
2020-09-18 131 1 7 0
2020-09-16 130 3 7 0
2020-09-15 127 1 7 0
2020-09-14 126 1 7 0
2020-09-09 125 1 7 0
2020-09-08 124 1 7 0
2020-09-05 123 2 7 0
2020-09-04 121 2 7 0
2020-08-28 119 1 7 0
2020-08-27 118 1 7 0
2020-08-25 117 3 7 0
2020-08-18 114 5 7 0
2020-08-13 109 1 7 0
2020-08-10 108 1 7 0
2020-07-29 107 1 7 0
2020-05-14 106 2 7 0
2020-04-23 104 1 7 0
2020-04-21 103 3 7 0
2020-04-18 100 1 7 0
2020-04-16 99 1 7 0
2020-04-15 98 3 7 0
2020-04-13 95 1 7 1
2020-04-11 94 3 6 0
2020-04-09 91 1 6 0
2020-04-08 90 11 6 1
2020-04-07 79 1 5 1
2020-04-04 78 2 4 1
2020-04-03 76 3 3 0
2020-04-02 73 3 3 1
2020-04-01 70 7 2 2
2020-03-31 63 7 0 0
2020-03-30 56 9 0 0
2020-03-28 47 2 0 0
2020-03-27 45 6 0 0
2020-03-26 39 3 0 0
2020-03-25 36 2 0 0
2020-03-24 34 5 0 0
2020-03-23 29 1 0 0
2020-03-21 28 4 0 0
2020-03-20 24 3 0 0
2020-03-19 21 6 0 0
2020-03-18 15 1 0 0
2020-03-17 14 2 0 0
2020-03-16 12 1 0 0
2020-03-15 11 5 0 0
2020-03-14 6 4 0 0

Explore the data in your web browser¶

  • If you want to execute this notebook, click here to use myBinder
  • and wait (~1 to 2 minutes)
  • Then press SHIFT+RETURN to advance code cell to code cell
  • See http://jupyter.org for more details on how to use Jupyter Notebook

Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:04:02.849950