Germany: LK Potsdam-Mittelmark (Brandenburg)¶

  • Homepage of project: https://oscovida.github.io
  • Plots are explained at http://oscovida.github.io/plots.html
  • Execute this Jupyter Notebook using myBinder
In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 12:20:49 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="LK Potsdam-Mittelmark", weeks=5);
2023-03-07T12:21:02.738265 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 50 50 60 60 70 70 80 80 7-day incidence rate (per 100K people) 51.0 LK Potsdam-Mittelmark, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 5 10 15 20 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.1 0.2 0.3 0.4 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Potsdam-Mittelmark cases daily growth factor Germany-LK Potsdam-Mittelmark cases daily growth factor (rolling mean) Germany-LK Potsdam-Mittelmark estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.0 0.5 0.5 1.0 1.0 R & growth factor (based on deaths) Germany-LK Potsdam-Mittelmark deaths daily growth factor Germany-LK Potsdam-Mittelmark deaths daily growth factor (rolling mean) Germany-LK Potsdam-Mittelmark estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 2000 4000 6000 cases doubling time [days] Germany-LK Potsdam-Mittelmark doubling time cases (rolling mean) 0.00 10.98 21.95 32.93 43.90 daily change Germany-LK Potsdam-Mittelmark new cases (rolling 7d mean) Germany-LK Potsdam-Mittelmark new cases 0.000 0.220 0.439 0.659 0.878 daily change Germany-LK Potsdam-Mittelmark new deaths (rolling 7d mean) Germany-LK Potsdam-Mittelmark new deaths 0.000 0.298 0.596 0.895
In [4]:
overview(country="Germany", subregion="LK Potsdam-Mittelmark");
2023-03-07T12:21:20.224615 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1000 1000 2000 2000 7-day incidence rate (per 100K people) 51.0 LK Potsdam-Mittelmark, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 200 400 600 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2 4 6 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Potsdam-Mittelmark cases daily growth factor Germany-LK Potsdam-Mittelmark cases daily growth factor (rolling mean) Germany-LK Potsdam-Mittelmark estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.0 0.0 0.5 0.5 1.0 1.0 R & growth factor (based on deaths) Germany-LK Potsdam-Mittelmark deaths daily growth factor Germany-LK Potsdam-Mittelmark deaths daily growth factor (rolling mean) Germany-LK Potsdam-Mittelmark estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2500 5000 7500 10000 cases doubling time [days] Germany-LK Potsdam-Mittelmark doubling time cases (rolling mean) Germany-LK Potsdam-Mittelmark doubling time deaths (rolling mean) 0 439 878 1317 daily change Germany-LK Potsdam-Mittelmark new cases (rolling 7d mean) Germany-LK Potsdam-Mittelmark new cases 0.00 4.39 8.78 13.17 daily change Germany-LK Potsdam-Mittelmark new deaths (rolling 7d mean) Germany-LK Potsdam-Mittelmark new deaths 0.0 67.7 135.4 203.1 270.8 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="LK Potsdam-Mittelmark", dates="2020-03-15:");
2023-03-07T12:23:36.910054 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: LK Potsdam-Mittelmark LK Potsdam-Mittelmark Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people LK Potsdam-Mittelmark Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="LK Potsdam-Mittelmark")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="LK Potsdam-Mittelmark")
print(f'Population of country="Germany", subregion="LK Potsdam-Mittelmark": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="LK Potsdam-Mittelmark": 219521 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 96678 7 347 0
2023-03-04 96671 8 347 0
2023-03-03 96663 9 347 0
2023-03-02 96654 15 347 0
2023-03-01 96639 32 347 0
2023-02-28 96607 41 347 0
2023-02-27 96566 41 347 0
2023-02-26 96525 1 347 0
2023-02-25 96524 1 347 0
2023-02-24 96523 25 347 0
2023-02-23 96498 38 347 0
2023-02-22 96460 40 347 0
2023-02-21 96420 33 347 0
2023-02-20 96387 19 347 0
2023-02-19 96368 1 347 0
2023-02-18 96367 1 347 0
2023-02-17 96366 13 347 0
2023-02-16 96353 30 347 0
2023-02-15 96323 41 347 0
2023-02-14 96282 28 347 0
2023-02-13 96254 29 347 1
2023-02-12 96225 1 346 0
2023-02-11 96224 18 346 0
2023-02-10 96206 21 346 0
2023-02-09 96185 39 346 0
2023-02-08 96146 26 346 0
2023-02-07 96120 44 346 0
2023-02-06 96076 36 346 1
2023-02-03 96040 27 345 0
2023-02-02 96013 25 345 0
2023-02-01 95988 43 345 0
2023-01-31 95945 21 345 0
2023-01-30 95924 28 345 0
2023-01-28 95896 9 345 0
2023-01-27 95887 26 345 1
2023-01-26 95861 23 344 0
2023-01-25 95838 31 344 0
2023-01-24 95807 27 344 0
2023-01-23 95780 22 344 1
2023-01-21 95758 13 343 0
2023-01-20 95745 26 343 0
2023-01-19 95719 20 343 0
2023-01-18 95699 25 343 0
2023-01-17 95674 45 343 1
2023-01-16 95629 23 342 0
2023-01-15 95606 3 342 0
2023-01-14 95603 8 342 0
2023-01-13 95595 20 342 0
2023-01-12 95575 19 342 0
2023-01-11 95556 48 342 0
2023-01-10 95508 42 342 1
2023-01-09 95466 38 341 0
2023-01-08 95428 2 341 0
2023-01-07 95426 15 341 0
2023-01-06 95411 46 341 0
2023-01-05 95365 55 341 1
2023-01-04 95310 58 340 0
2023-01-03 95252 106 340 0
2023-01-02 95146 52 340 2
2023-01-01 95094 6 338 1
2022-12-31 95088 19 337 1
2022-12-30 95069 122 336 0
2022-12-29 94947 108 336 0
2022-12-28 94839 119 336 2
2022-12-27 94720 111 334 0
2022-12-26 94609 6 334 0
2022-12-25 94603 37 334 0
2022-12-24 94566 13 334 0
2022-12-23 94553 59 334 0
2022-12-22 94494 94 334 0
2022-12-21 94400 121 334 1
2022-12-20 94279 167 333 1
2022-12-19 94112 122 332 0
2022-12-18 93990 8 332 0
2022-12-17 93982 22 332 0
2022-12-16 93960 138 332 1
2022-12-15 93822 110 331 0
2022-12-14 93712 165 331 0
2022-12-13 93547 188 331 1
2022-12-12 93359 198 330 0
2022-12-11 93161 5 330 0
2022-12-10 93156 15 330 0
2022-12-09 93141 111 330 0
2022-12-08 93030 150 330 0
2022-12-07 92880 152 330 1
2022-12-06 92728 211 329 0
2022-12-05 92517 216 329 1
2022-12-03 92301 7 328 0
2022-12-02 92294 117 328 0
2022-12-01 92177 176 328 1
2022-11-30 92001 166 327 0
2022-11-29 91835 136 327 0
2022-11-28 91699 140 327 0
2022-11-27 91559 25 327 0
2022-11-26 91534 35 327 1
2022-11-25 91499 79 326 0
2022-11-24 91420 129 326 0
2022-11-23 91291 122 326 0
2022-11-22 91169 141 326 0
2022-11-21 91028 120 326 0
2022-11-20 90908 20 326 0
2022-11-19 90888 10 326 0
2022-11-18 90878 115 326 0
2022-11-17 90763 61 326 0
2022-11-16 90702 79 326 0
2022-11-15 90623 105 326 1
2022-11-14 90518 88 325 0
2022-11-13 90430 17 325 0
2022-11-12 90413 12 325 0
2022-11-11 90401 106 325 0
2022-11-10 90295 92 325 1
2022-11-09 90203 119 324 0
2022-11-08 90084 110 324 0
2022-11-07 89974 106 324 1
2022-11-06 89868 19 323 0
2022-11-05 89849 49 323 0
2022-11-04 89800 98 323 0
2022-11-03 89702 125 323 0
2022-11-02 89577 163 323 0
2022-11-01 89414 126 323 0
2022-10-31 89288 17 323 0
2022-10-30 89271 16 323 0
2022-10-29 89255 40 323 1
2022-10-28 89215 147 322 0
2022-10-27 89068 113 322 0
2022-10-26 88955 203 322 0
2022-10-25 88752 260 322 0
2022-10-24 88492 171 322 0
2022-10-23 88321 9 322 0
2022-10-22 88312 109 322 0
2022-10-21 88203 177 322 0
2022-10-20 88026 252 322 0
2022-10-19 87774 362 322 0
2022-10-18 87412 351 322 1
2022-10-17 87061 361 321 1
2022-10-16 86700 18 320 0
2022-10-15 86682 111 320 0
2022-10-14 86571 211 320 0
2022-10-13 86360 341 320 0
2022-10-12 86019 378 320 1
2022-10-11 85641 375 319 1
2022-10-10 85266 309 318 0
2022-10-09 84957 44 318 0
2022-10-08 84913 68 318 2
2022-10-07 84845 402 316 1
2022-10-06 84443 446 315 1
2022-10-05 83997 387 314 1
2022-10-04 83610 227 313 0
2022-10-03 83383 5 313 0
2022-10-02 83378 5 313 0
2022-10-01 83373 14 313 0
2022-09-30 83359 186 313 0
2022-09-29 83173 173 313 0
2022-09-28 83000 284 313 0
2022-09-27 82716 309 313 1
2022-09-26 82407 263 312 0
2022-09-25 82144 8 312 0
2022-09-24 82136 2 312 0
2022-09-23 82134 123 312 1
2022-09-22 82011 124 311 0
2022-09-21 81887 184 311 1
2022-09-20 81703 202 310 0
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2022-09-18 81315 3 310 1
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2022-08-28 79115 1 308 0
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Explore the data in your web browser¶

  • If you want to execute this notebook, click here to use myBinder
  • and wait (~1 to 2 minutes)
  • Then press SHIFT+RETURN to advance code cell to code cell
  • See http://jupyter.org for more details on how to use Jupyter Notebook

Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:02:59.820079