Germany: LK Neu-Ulm (Bayern)¶

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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 11:12:33 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="LK Neu-Ulm", weeks=5);
2023-03-07T11:12:49.100316 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 60 60 80 80 100 100 120 120 7-day incidence rate (per 100K people) 49.1 LK Neu-Ulm, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 10 20 30 40 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.2 0.4 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 1.4 1.4 R & growth factor (based on cases) Germany-LK Neu-Ulm cases daily growth factor Germany-LK Neu-Ulm cases daily growth factor (rolling mean) Germany-LK Neu-Ulm estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-LK Neu-Ulm deaths daily growth factor Germany-LK Neu-Ulm deaths daily growth factor (rolling mean) Germany-LK Neu-Ulm estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 2000 4000 6000 cases doubling time [days] Germany-LK Neu-Ulm doubling time cases (rolling mean) 0.00 17.73 35.47 53.20 70.93 daily change Germany-LK Neu-Ulm new cases (rolling 7d mean) Germany-LK Neu-Ulm new cases 0.000 0.355 0.709 daily change Germany-LK Neu-Ulm new deaths (rolling 7d mean) Germany-LK Neu-Ulm new deaths 0.000 0.281 0.561 0.842
In [4]:
overview(country="Germany", subregion="LK Neu-Ulm");
2023-03-07T11:13:08.123026 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1000 1000 2000 2000 7-day incidence rate (per 100K people) 49.1 LK Neu-Ulm, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 200 400 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2 4 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.8 0.8 1.0 1.0 1.2 1.2 1.4 1.4 R & growth factor (based on cases) Germany-LK Neu-Ulm cases daily growth factor Germany-LK Neu-Ulm cases daily growth factor (rolling mean) Germany-LK Neu-Ulm estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-LK Neu-Ulm deaths daily growth factor Germany-LK Neu-Ulm deaths daily growth factor (rolling mean) Germany-LK Neu-Ulm estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 2000 4000 6000 8000 cases doubling time [days] Germany-LK Neu-Ulm doubling time cases (rolling mean) Germany-LK Neu-Ulm doubling time deaths (rolling mean) 0 355 709 daily change Germany-LK Neu-Ulm new cases (rolling 7d mean) Germany-LK Neu-Ulm new cases 0.00 3.55 7.09 daily change Germany-LK Neu-Ulm new deaths (rolling 7d mean) Germany-LK Neu-Ulm new deaths 0.0 61.9 123.8 185.7 247.6 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="LK Neu-Ulm", dates="2020-03-15:");
2023-03-07T11:16:02.038299 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: LK Neu-Ulm LK Neu-Ulm Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people LK Neu-Ulm Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="LK Neu-Ulm")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="LK Neu-Ulm")
print(f'Population of country="Germany", subregion="LK Neu-Ulm": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="LK Neu-Ulm": 177330 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 81712 11 312 0
2023-03-05 81701 1 312 0
2023-03-03 81700 9 312 0
2023-03-02 81691 15 312 0
2023-03-01 81676 33 312 0
2023-02-28 81643 18 312 0
2023-02-27 81625 46 312 0
2023-02-26 81579 1 312 0
2023-02-24 81578 20 312 0
2023-02-23 81558 36 312 0
2023-02-22 81522 33 312 0
2023-02-21 81489 46 312 0
2023-02-20 81443 71 312 1
2023-02-17 81372 21 311 0
2023-02-16 81351 34 311 0
2023-02-15 81317 54 311 1
2023-02-14 81263 60 310 0
2023-02-13 81203 44 310 0
2023-02-10 81159 29 310 0
2023-02-09 81130 23 310 0
2023-02-08 81107 31 310 0
2023-02-07 81076 30 310 0
2023-02-06 81046 40 310 0
2023-02-03 81006 24 310 0
2023-02-02 80982 21 310 0
2023-02-01 80961 39 310 0
2023-01-31 80922 36 310 0
2023-01-30 80886 27 310 0
2023-01-27 80859 17 310 0
2023-01-26 80842 22 310 0
2023-01-25 80820 24 310 0
2023-01-24 80796 27 310 0
2023-01-23 80769 32 310 0
2023-01-20 80737 19 310 0
2023-01-19 80718 5 310 0
2023-01-18 80713 13 310 0
2023-01-17 80700 22 310 0
2023-01-16 80678 23 310 0
2023-01-15 80655 1 310 0
2023-01-13 80654 16 310 0
2023-01-12 80638 21 310 0
2023-01-11 80617 28 310 0
2023-01-10 80589 32 310 1
2023-01-09 80557 32 309 2
2023-01-07 80525 1 307 0
2023-01-06 80524 1 307 0
2023-01-05 80523 15 307 0
2023-01-04 80508 23 307 0
2023-01-03 80485 22 307 0
2023-01-02 80463 44 307 0
2022-12-30 80419 25 307 0
2022-12-29 80394 20 307 0
2022-12-28 80374 55 307 0
2022-12-27 80319 63 307 1
2022-12-23 80256 33 306 0
2022-12-22 80223 24 306 0
2022-12-21 80199 47 306 0
2022-12-20 80152 46 306 0
2022-12-19 80106 69 306 1
2022-12-18 80037 1 305 0
2022-12-16 80036 32 305 0
2022-12-15 80004 35 305 1
2022-12-14 79969 51 304 2
2022-12-13 79918 53 302 0
2022-12-12 79865 55 302 1
2022-12-09 79810 29 301 1
2022-12-08 79781 28 300 0
2022-12-07 79753 52 300 0
2022-12-06 79701 116 300 0
2022-12-05 79585 38 300 0
2022-12-03 79547 1 300 0
2022-12-02 79546 36 300 0
2022-12-01 79510 20 300 0
2022-11-30 79490 32 300 0
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2022-11-28 79432 45 300 1
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2022-11-15 79047 59 299 1
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2022-11-11 78913 36 298 0
2022-11-10 78877 49 298 0
2022-11-09 78828 53 298 0
2022-11-08 78775 78 298 0
2022-11-07 78697 102 298 1
2022-11-04 78595 45 297 0
2022-11-03 78550 65 297 0
2022-11-02 78485 112 297 0
2022-10-31 78373 84 297 1
2022-10-30 78289 1 296 0
2022-10-28 78288 53 296 0
2022-10-27 78235 91 296 0
2022-10-26 78144 101 296 1
2022-10-25 78043 152 295 0
2022-10-24 77891 214 295 2
2022-10-23 77677 1 293 0
2022-10-22 77676 2 293 0
2022-10-21 77674 108 293 0
2022-10-20 77566 146 293 0
2022-10-19 77420 213 293 0
2022-10-18 77207 234 293 0
2022-10-17 76973 316 293 1
2022-10-16 76657 3 292 0
2022-10-14 76654 164 292 0
2022-10-13 76490 219 292 2
2022-10-12 76271 265 290 0
2022-10-11 76006 329 290 0
2022-10-10 75677 467 290 1
2022-10-09 75210 7 289 0
2022-10-08 75203 2 289 0
2022-10-07 75201 240 289 0
2022-10-06 74961 331 289 1
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2022-10-04 74268 353 288 0
2022-10-03 73915 2 288 0
2022-10-02 73913 1 288 0
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2022-09-29 73742 200 288 0
2022-09-28 73542 233 288 1
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2022-09-25 72896 2 287 0
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2022-09-22 72812 99 287 0
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2022-09-08 72105 69 287 0
2022-09-07 72036 65 287 0
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2022-09-04 71837 1 287 0
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Explore the data in your web browser¶

  • If you want to execute this notebook, click here to use myBinder
  • and wait (~1 to 2 minutes)
  • Then press SHIFT+RETURN to advance code cell to code cell
  • See http://jupyter.org for more details on how to use Jupyter Notebook

Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:03:48.230821