Germany: LK Rhein-Neckar-Kreis (Baden-Württemberg)¶

  • Homepage of project: https://oscovida.github.io
  • Plots are explained at http://oscovida.github.io/plots.html
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In [1]:
import datetime
import time

start = datetime.datetime.now()
print(f"Notebook executed on: {start.strftime('%d/%m/%Y %H:%M:%S%Z')} {time.tzname[time.daylight]}")
Notebook executed on: 07/03/2023 10:10:38 CEST
In [2]:
%config InlineBackend.figure_formats = ['svg']
from oscovida import *
In [3]:
overview(country="Germany", subregion="LK Rhein-Neckar-Kreis", weeks=5);
2023-03-07T10:10:51.301214 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 150 150 200 200 250 250 7-day incidence rate (per 100K people) 127.9 LK Rhein-Neckar-Kreis, Germany, last 5 weeks, last data point from 2023-03-06 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 20 40 60 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.0 0.1 0.2 0.3 daily change normalised per 100K 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Rhein-Neckar-Kreis cases daily growth factor Germany-LK Rhein-Neckar-Kreis cases daily growth factor (rolling mean) Germany-LK Rhein-Neckar-Kreis estimated R (using cases) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-LK Rhein-Neckar-Kreis deaths daily growth factor Germany-LK Rhein-Neckar-Kreis deaths daily growth factor (rolling mean) Germany-LK Rhein-Neckar-Kreis estimated R (using deaths) 30 Jan 06 Feb 13 Feb 20 Feb 27 Feb 06 Mar 0 1000 2000 cases doubling time [days] Germany-LK Rhein-Neckar-Kreis doubling time cases (rolling mean) 0.0 109.8 219.6 329.4 daily change Germany-LK Rhein-Neckar-Kreis new cases (rolling 7d mean) Germany-LK Rhein-Neckar-Kreis new cases 0.000 0.549 1.098 1.647 daily change Germany-LK Rhein-Neckar-Kreis new deaths (rolling 7d mean) Germany-LK Rhein-Neckar-Kreis new deaths 0.000 0.374 0.748
In [4]:
overview(country="Germany", subregion="LK Rhein-Neckar-Kreis");
2023-03-07T10:11:09.632893 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 500 500 1000 1000 1500 1500 2000 2000 7-day incidence rate (per 100K people) 127.9 LK Rhein-Neckar-Kreis, Germany, last data point from 2023-03-06 May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 100 200 300 400 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.0 0.5 1.0 1.5 2.0 daily change normalised per 100K May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0.8 0.8 1.0 1.0 1.2 1.2 R & growth factor (based on cases) Germany-LK Rhein-Neckar-Kreis cases daily growth factor Germany-LK Rhein-Neckar-Kreis cases daily growth factor (rolling mean) Germany-LK Rhein-Neckar-Kreis estimated R (using cases) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 0 1 1 2 2 3 3 4 4 R & growth factor (based on deaths) Germany-LK Rhein-Neckar-Kreis deaths daily growth factor Germany-LK Rhein-Neckar-Kreis deaths daily growth factor (rolling mean) Germany-LK Rhein-Neckar-Kreis estimated R (using deaths) May 20 Sep 20 Jan 21 May 21 Sep 21 Jan 22 May 22 Sep 22 Jan 23 0 5000 10000 cases doubling time [days] Germany-LK Rhein-Neckar-Kreis doubling time cases (rolling mean) Germany-LK Rhein-Neckar-Kreis doubling time deaths (rolling mean) 0 549 1098 1647 2196 daily change Germany-LK Rhein-Neckar-Kreis new cases (rolling 7d mean) Germany-LK Rhein-Neckar-Kreis new cases 0.00 2.75 5.49 8.24 10.98 daily change Germany-LK Rhein-Neckar-Kreis new deaths (rolling 7d mean) Germany-LK Rhein-Neckar-Kreis new deaths 0 429 859 deaths doubling time [days]
In [5]:
compare_plot(country="Germany", subregion="LK Rhein-Neckar-Kreis", dates="2020-03-15:");
2023-03-07T10:13:13.527392 image/svg+xml Matplotlib v3.7.1, https://matplotlib.org/ 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.1 0.1 1 1 10 10 100 100 daily new cases (rolling 7-day mean) normalised by 100K people Daily cases (top) and deaths (below) for Germany: LK Rhein-Neckar-Kreis LK Rhein-Neckar-Kreis Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt 2020-05 2020-09 2021-01 2021-05 2021-09 2022-01 2022-05 2022-09 2023-01 0.001 0.001 0.01 0.01 0.1 0.1 1 1 daily new deaths (rolling 7-day mean) normalised by 100K people LK Rhein-Neckar-Kreis Bayern Berlin Bremen Hamburg Hessen Nordrhein-Westfalen Sachsen-Anhalt
In [6]:
# load the data
cases, deaths = germany_get_region(landkreis="LK Rhein-Neckar-Kreis")

# get population of the region for future normalisation:
inhabitants = population(country="Germany", subregion="LK Rhein-Neckar-Kreis")
print(f'Population of country="Germany", subregion="LK Rhein-Neckar-Kreis": {inhabitants} people')

# compose into one table
table = compose_dataframe_summary(cases, deaths)

# show tables with up to 1000 rows
pd.set_option("display.max_rows", 1000)

# display the table
table
Population of country="Germany", subregion="LK Rhein-Neckar-Kreis": 549030 people
Out[6]:
total cases daily new cases total deaths daily new deaths
date
2023-03-06 249388 75 922 0
2023-03-03 249313 52 922 0
2023-03-02 249261 94 922 1
2023-03-01 249167 384 921 2
2023-02-28 248783 97 919 0
2023-02-27 248686 211 919 0
2023-02-24 248475 185 919 0
2023-02-23 248290 179 919 1
2023-02-22 248111 211 918 0
2023-02-21 247900 213 918 0
2023-02-20 247687 350 918 0
2023-02-17 247337 257 918 0
2023-02-16 247080 431 918 0
2023-02-15 246649 156 918 0
2023-02-14 246493 258 918 0
2023-02-13 246235 333 918 0
2023-02-10 245902 281 918 0
2023-02-09 245621 222 918 0
2023-02-08 245399 257 918 0
2023-02-07 245142 250 918 1
2023-02-06 244892 267 917 0
2023-02-03 244625 198 917 1
2023-02-02 244427 307 916 0
2023-02-01 244120 244 916 0
2023-01-31 243876 280 916 1
2023-01-30 243596 243 915 2
2023-01-27 243353 166 913 1
2023-01-26 243187 154 912 1
2023-01-25 243033 184 911 0
2023-01-24 242849 237 911 1
2023-01-23 242612 153 910 1
2023-01-20 242459 113 909 0
2023-01-19 242346 144 909 0
2023-01-18 242202 138 909 0
2023-01-17 242064 136 909 0
2023-01-16 241928 176 909 2
2023-01-13 241752 103 907 0
2023-01-12 241649 115 907 0
2023-01-11 241534 176 907 0
2023-01-10 241358 219 907 0
2023-01-09 241139 271 907 0
2023-01-05 240868 175 907 0
2023-01-04 240693 167 907 0
2023-01-03 240526 226 907 2
2023-01-02 240300 265 905 0
2022-12-30 240035 163 905 1
2022-12-29 239872 206 904 0
2022-12-28 239666 262 904 3
2022-12-27 239404 425 901 2
2022-12-23 238979 235 899 2
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2022-12-15 237595 202 892 0
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2022-12-13 237203 248 892 1
2022-12-12 236955 296 891 4
2022-12-09 236659 123 887 0
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Explore the data in your web browser¶

  • If you want to execute this notebook, click here to use myBinder
  • and wait (~1 to 2 minutes)
  • Then press SHIFT+RETURN to advance code cell to code cell
  • See http://jupyter.org for more details on how to use Jupyter Notebook

Acknowledgements:¶

  • Johns Hopkins University provides data for countries
  • Robert Koch Institute provides data for within Germany
  • Atlo Team for gathering and providing data from Hungary (https://atlo.team/koronamonitor/)
  • Open source and scientific computing community for the data tools
  • Github for hosting repository and html files
  • Project Jupyter for the Notebook and binder service
  • The H2020 project Photon and Neutron Open Science Cloud (PaNOSC)

In [7]:
print(f"Download of data from Johns Hopkins university: cases at {fetch_cases_last_execution()} and "
      f"deaths at {fetch_deaths_last_execution()}.")
Download of data from Johns Hopkins university: cases at 07/03/2023 09:31:22 and deaths at 07/03/2023 09:31:21.
In [8]:
# to force a fresh download of data, run "clear_cache()"
In [9]:
print(f"Notebook execution took: {datetime.datetime.now()-start}")
Notebook execution took: 0:02:58.707722